Scaffold Ga0315290_10002663

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315290_10002663

Scaffold Ga0315290_10002663

Overview

Basic Information
Taxon OID	3300031834 Open in IMG/M
Scaffold ID	Ga0315290_10002663 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12642
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5895	Long. (^o)	-110.359	Alt. (m)		Depth (m)	92
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076701	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315290_1000266321	F076701	GAGG	MTYRPPFIKQGDGSRCQWQNCGCAAHAMAAMRSRLGRNPNNEHGWPPTPSEIRNRIGGGCDGTNLQENAAAVAHLYGVIMLVRYGVPWNTFRSLIISGRGAVVQIRYSVIAPTRFDASPGFTGNHAVYVNERRSSDGAYYVYDPLADHRRSSIPQGPQWWPATLLQRAAYAMPGTSTGCVNASFTRDTE

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